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Restored autoindexing functionality in GUI (not just for trypsin)

Raza, Zamaan requested to merge autoindex_gui into develop

Resolves #70 (closed)

I have added the ability to filter by frame number to the peak filter tab of the GUI. Now it's possible to autoindex with the following procedure:

  1. Find peaks
  2. Integrate
  3. Filter peaks to exclude bad peaks by strength and d-range, and in a limited subset of frames (e.g. 0-10)
  4. Save filtered peaks to a collection
  5. Autoindex the filtered collection

I have also added a progress bar to the integration performed under the "Find peaks" tab"

Edited by Raza, Zamaan

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