Merge branch 'Sphinx' into develop

Doc/Sphinx/Makefile

+# Makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = sphinx-build
+PAPER         =
+BUILDDIR      = _build
+
+# Internal variables.
+PAPEROPT_a4     = -D latex_paper_size=a4
+PAPEROPT_letter = -D latex_paper_size=letter
+ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+# the i18n builder cannot share the environment and doctrees with the others
+I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
+
+.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
+
+help:
+	@echo "Please use \`make <target>' where <target> is one of"
+	@echo "  html       to make standalone HTML files"
+	@echo "  dirhtml    to make HTML files named index.html in directories"
+	@echo "  singlehtml to make a single large HTML file"
+	@echo "  pickle     to make pickle files"
+	@echo "  json       to make JSON files"
+	@echo "  htmlhelp   to make HTML files and a HTML help project"
+	@echo "  qthelp     to make HTML files and a qthelp project"
+	@echo "  devhelp    to make HTML files and a Devhelp project"
+	@echo "  epub       to make an epub"
+	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
+	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"
+	@echo "  text       to make text files"
+	@echo "  man        to make manual pages"
+	@echo "  texinfo    to make Texinfo files"
+	@echo "  info       to make Texinfo files and run them through makeinfo"
+	@echo "  gettext    to make PO message catalogs"
+	@echo "  changes    to make an overview of all changed/added/deprecated items"
+	@echo "  linkcheck  to check all external links for integrity"
+	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
+
+clean:
+	-rm -rf $(BUILDDIR)/*
+
+html:
+	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
+	@echo
+	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
+
+dirhtml:
+	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
+	@echo
+	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
+
+singlehtml:
+	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
+	@echo
+	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
+
+pickle:
+	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
+	@echo
+	@echo "Build finished; now you can process the pickle files."
+
+json:
+	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
+	@echo
+	@echo "Build finished; now you can process the JSON files."
+
+htmlhelp:
+	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
+	@echo
+	@echo "Build finished; now you can run HTML Help Workshop with the" \
+	      ".hhp project file in $(BUILDDIR)/htmlhelp."
+
+qthelp:
+	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
+	@echo
+	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
+	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
+	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/BornAgain.qhcp"
+	@echo "To view the help file:"
+	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/BornAgain.qhc"
+
+devhelp:
+	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
+	@echo
+	@echo "Build finished."
+	@echo "To view the help file:"
+	@echo "# mkdir -p $$HOME/.local/share/devhelp/BornAgain"
+	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/BornAgain"
+	@echo "# devhelp"
+
+epub:
+	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
+	@echo
+	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
+
+latex:
+	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+	@echo
+	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
+	@echo "Run \`make' in that directory to run these through (pdf)latex" \
+	      "(use \`make latexpdf' here to do that automatically)."
+
+latexpdf:
+	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
+	@echo "Running LaTeX files through pdflatex..."
+	$(MAKE) -C $(BUILDDIR)/latex all-pdf
+	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
+
+text:
+	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
+	@echo
+	@echo "Build finished. The text files are in $(BUILDDIR)/text."
+
+man:
+	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
+	@echo
+	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
+
+texinfo:
+	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+	@echo
+	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
+	@echo "Run \`make' in that directory to run these through makeinfo" \
+	      "(use \`make info' here to do that automatically)."
+
+info:
+	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
+	@echo "Running Texinfo files through makeinfo..."
+	make -C $(BUILDDIR)/texinfo info
+	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
+
+gettext:
+	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
+	@echo
+	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
+
+changes:
+	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
+	@echo
+	@echo "The overview file is in $(BUILDDIR)/changes."
+
+linkcheck:
+	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
+	@echo
+	@echo "Link check complete; look for any errors in the above output " \
+	      "or in $(BUILDDIR)/linkcheck/output.txt."
+
+doctest:
+	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
+	@echo "Testing of doctests in the sources finished, look at the " \
+	      "results in $(BUILDDIR)/doctest/output.txt."

Doc/Sphinx/_static/bornagain.css

+/*
+ * sphinxdoc.css_t
+ * ~~~~~~~~~~~~~~~
+ *
+ * Sphinx stylesheet -- sphinxdoc theme.  Originally created by
+ * Armin Ronacher for Werkzeug.
+ *
+ * :copyright: Copyright 2007-2011 by the Sphinx team, see AUTHORS.
+ * :license: BSD, see LICENSE for details.
+ *
+ */
+
+@import url("basic.css");
+
+/* -- page layout ----------------------------------------------------------- */
+
+body {
+    font-family: 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva',
+                 'Verdana', sans-serif;
+    font-size: 14px;
+    letter-spacing: -0.01em;
+    line-height: 150%;
+    text-align: center;
+    background-color: #BFD1D4;
+    color: black;
+    padding: 0;
+    border: 1px solid #aaa;
+
+    margin: 0px 80px 0px 80px;
+    min-width: 740px;
+}
+
+div.document {
+    background-color: white;
+    text-align: left;
+    background-image: url(contents.png);
+    background-repeat: repeat-x;
+}
+
+div.bodywrapper {
+    margin: 0 240px 0 0;
+    border-right: 1px solid #ccc;
+}
+
+div.body {
+    margin: 0;
+    padding: 0.5em 20px 20px 20px;
+}
+
+div.related {
+    font-size: 1em;
+}
+
+div.related ul {
+    background-image: url(navigation.png);
+    height: 2em;
+    border-top: 1px solid #ddd;
+    border-bottom: 1px solid #ddd;
+}
+
+div.related ul li {
+    margin: 0;
+    padding: 0;
+    height: 2em;
+    float: left;
+}
+
+div.related ul li.right {
+    float: right;
+    margin-right: 5px;
+}
+
+div.related ul li a {
+    margin: 0;
+    padding: 0 5px 0 5px;
+    line-height: 1.75em;
+    color: #EE9816;
+}
+
+div.related ul li a:hover {
+    color: #3CA8E7;
+}
+
+div.sphinxsidebarwrapper {
+    padding: 0;
+}
+
+div.sphinxsidebar {
+    margin: 0;
+    padding: 0.5em 15px 15px 0;
+    width: 210px;
+    float: right;
+    font-size: 1em;
+    text-align: left;
+}
+
+div.sphinxsidebar h3, div.sphinxsidebar h4 {
+    margin: 1em 0 0.5em 0;
+    font-size: 1em;
+    padding: 0.1em 0 0.1em 0.5em;
+    color: white;
+    border: 1px solid #86989B;
+    background-color: #AFC1C4;
+}
+
+div.sphinxsidebar h3 a {
+    color: white;
+}
+
+div.sphinxsidebar ul {
+    padding-left: 1.5em;
+    margin-top: 7px;
+    padding: 0;
+    line-height: 130%;
+}
+
+div.sphinxsidebar ul ul {
+    margin-left: 20px;
+}
+
+div.footer {
+    background-color: #E3EFF1;
+    color: #86989B;
+    padding: 3px 8px 3px 0;
+    clear: both;
+    font-size: 0.8em;
+    text-align: right;
+}
+
+div.footer a {
+    color: #86989B;
+    text-decoration: underline;
+}
+
+/* -- body styles ----------------------------------------------------------- */
+
+p {    
+    margin: 0.8em 0 0.5em 0;
+}
+
+a {
+    color: #CA7900;
+    text-decoration: none;
+}
+
+a:hover {
+    color: #2491CF;
+}
+
+div.body a {
+    text-decoration: underline;
+}
+
+h1 {
+    margin: 0;
+    padding: 0.7em 0 0.3em 0;
+    font-size: 1.5em;
+    color: #11557C;
+}
+
+h2 {
+    margin: 1.3em 0 0.2em 0;
+    font-size: 1.35em;
+    padding: 0;
+}
+
+h3 {
+    margin: 1em 0 -0.3em 0;
+    font-size: 1.2em;
+}
+
+div.body h1 a, div.body h2 a, div.body h3 a, div.body h4 a, div.body h5 a, div.body h6 a {
+    color: black!important;
+}
+
+h1 a.anchor, h2 a.anchor, h3 a.anchor, h4 a.anchor, h5 a.anchor, h6 a.anchor {
+    display: none;
+    margin: 0 0 0 0.3em;
+    padding: 0 0.2em 0 0.2em;
+    color: #aaa!important;
+}
+
+h1:hover a.anchor, h2:hover a.anchor, h3:hover a.anchor, h4:hover a.anchor,
+h5:hover a.anchor, h6:hover a.anchor {
+    display: inline;
+}
+
+h1 a.anchor:hover, h2 a.anchor:hover, h3 a.anchor:hover, h4 a.anchor:hover,
+h5 a.anchor:hover, h6 a.anchor:hover {
+    color: #777;
+    background-color: #eee;
+}
+
+a.headerlink {
+    color: #c60f0f!important;
+    font-size: 1em;
+    margin-left: 6px;
+    padding: 0 4px 0 4px;
+    text-decoration: none!important;
+}
+
+a.headerlink:hover {
+    background-color: #ccc;
+    color: white!important;
+}
+
+cite, code, tt {
+    font-family: 'Consolas', 'Deja Vu Sans Mono',
+                 'Bitstream Vera Sans Mono', monospace;
+    font-size: 0.95em;
+    letter-spacing: 0.01em;
+}
+
+tt {
+    background-color: #f2f2f2;
+    border-bottom: 1px solid #ddd;
+    color: #333;
+}
+
+tt.descname, tt.descclassname, tt.xref {
+    border: 0;
+}
+
+hr {
+    border: 1px solid #abc;
+    margin: 2em;
+}
+
+a tt {
+    border: 0;
+    color: #CA7900;
+}
+
+a tt:hover {
+    color: #2491CF;
+}
+
+pre {
+    font-family: 'Consolas', 'Deja Vu Sans Mono',
+                 'Bitstream Vera Sans Mono', monospace;
+    font-size: 0.95em;
+    letter-spacing: 0.015em;
+    line-height: 120%;
+    padding: 0.5em;
+    border: 1px solid #ccc;
+    background-color: #f8f8f8;
+}
+
+pre a {
+    color: inherit;
+    text-decoration: underline;
+}
+
+td.linenos pre {
+    padding: 0.5em 0;
+}
+
+div.quotebar {
+    background-color: #f8f8f8;
+    max-width: 250px;
+    float: right;
+    padding: 2px 7px;
+    border: 1px solid #ccc;
+}
+
+div.topic {
+    background-color: #f8f8f8;
+}
+
+table {
+    border-collapse: collapse;
+    margin: 0 -0.5em 0 -0.5em;
+}
+
+table td, table th {
+    padding: 0.2em 0.5em 0.2em 0.5em;
+}
+
+div.admonition, div.warning {
+    font-size: 0.9em;
+    margin: 1em 0 1em 0;
+    border: 1px solid #86989B;
+    background-color: #f7f7f7;
+    padding: 0;
+}
+
+div.admonition p, div.warning p {
+    margin: 0.5em 1em 0.5em 1em;
+    padding: 0;
+}
+
+div.admonition pre, div.warning pre {
+    margin: 0.4em 1em 0.4em 1em;
+}
+
+div.admonition p.admonition-title,
+div.warning p.admonition-title {
+    margin: 0;
+    padding: 0.1em 0 0.1em 0.5em;
+    color: white;
+    border-bottom: 1px solid #86989B;
+    font-weight: bold;
+    background-color: #AFC1C4;
+}
+
+div.warning {
+    border: 1px solid #940000;
+}
+
+div.warning p.admonition-title {
+    background-color: #CF0000;
+    border-bottom-color: #940000;
+}
+
+div.admonition ul, div.admonition ol,
+div.warning ul, div.warning ol {
+    margin: 0.1em 0.5em 0.5em 3em;
+    padding: 0;
+}
+
+div.versioninfo {
+    margin: 1em 0 0 0;
+    border: 1px solid #ccc;
+    background-color: #DDEAF0;
+    padding: 8px;
+    line-height: 1.3em;
+    font-size: 0.9em;
+}
+
+.viewcode-back {
+    font-family: 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva',
+                 'Verdana', sans-serif;
+}
+
+div.viewcode-block:target {
+    background-color: #f4debf;
+    border-top: 1px solid #ac9;
+    border-bottom: 1px solid #ac9;
+}
+
+div.leftside {
+    width: 550px;
+    float: left;
+    margin-top: 25px;
+}
+
+div.rightside {
+    margin-left: 550px;
+    margin-bottom: 25px;
+}