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Corrections to workflow, including fixing predicted peak integration

Raza, Zamaan requested to merge intensity_nan into develop

Thanks to some modifications to predicted peak integration (notable passing the correct parameters to the integrator), the workflow now essentially works for all stages. The quality metrics are not good enough yet, but hopefully that will improve with the addition of the unit cell and detector settings refinement step.

  • Fixed integration of predicted peaks
  • Modified filters and peak collections in workflow such that zero intensity peaks are filtered out before the prediction step
  • Added a function to PeakCollection for sanity checking (number of NaN and zero intensity peaks)

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