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First round of refactoring for experiment class

Raza, Zamaan requested to merge experiment_refactor_3 into develop

Added PeakHandler and UnitCellHandler classes. Reversed some changes made to DataQuality by @j.wuttke because I don't think that the new scheme made much sense --- CC1/2 - CC* is not the analogue of Rmerge - expectedRMerge.

Since this is a pretty big change, I would appreciate some testing (I have already tested and confirm that it works with trypsin and strep).

Edited by Raza, Zamaan

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